Package: FLAssess 2.6.3.9001

Iago Mosqueira

FLAssess: Generic Classes and Methods for Stock Assessment Models

A generic set of classes for stock assessment models are provided here. Individual assessment packages should extend the basic classes.

Authors:Iago Mosqueira [cre], Laurence T. Kell [aut]

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FLAssess.pdf |FLAssess.html✨
FLAssess/json (API)
NEWS

# Install 'FLAssess' in R:
install.packages('FLAssess', repos = c('https://flr.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/flr/flassess/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On CRAN:

cpp

4.77 score 3 packages 324 scripts 20 exports 30 dependencies

Last updated 2 months agofrom:e276a8c225. Checks:1 OK, 8 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKJan 01 2025
R-4.5-win-x86_64WARNINGJan 01 2025
R-4.5-linux-x86_64WARNINGJan 01 2025
R-4.4-win-x86_64WARNINGJan 01 2025
R-4.4-mac-x86_64WARNINGJan 01 2025
R-4.4-mac-aarch64WARNINGJan 01 2025
R-4.3-win-x86_64WARNINGJan 01 2025
R-4.3-mac-x86_64WARNINGJan 01 2025
R-4.3-mac-aarch64WARNINGJan 01 2025

Exports:assessfittedFLAssessFLSepVPA.controlfmleharvestindex.hatindex.hat<-index.nameindex.name<-index.rangeindex.range<-index.resindex.res<-mergeplotSepVPAsummaryVPAZ

Dependencies:clicolorspacefansifarverFLCoreggplot2gluegtableisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Call an stock assessment modelassess assess,FLAssess-method assess-methods
FLAssess datasetass
FLAssess class and methods+,FLAssess,FLStock-method +,FLStock,FLAssess-method FLAssess FLAssess,FLQuant-method FLAssess,missing-method FLAssess-class FLAssess-methods harvest,FLAssess,missing-method index.hat index.hat,FLAssess-method index.hat<- index.hat<-,FLAssess,FLQuants-method index.name index.name,FLAssess-method index.name<- index.name<-,FLAssess,character-method index.range index.range,FLAssess-method index.range<- index.range<-,FLAssess,list-method index.res index.res,FLAssess-method index.res<- index.res<-,FLAssess,FLQuants-method merge,FLStock,FLAssess-method plot,FLAssess,missing-method show,FLAssess-method summary,FLAssess-method units,FLAssess-method units<-,FLAssess,list-method update,FLAssess-method window,FLAssess-method
Control class for FLSepVPAFLSepVPA.control FLSepVPA.control-class
Sets catch data if no discardsno.discards no.discards,FLStock-method no.discards-methods
Plot method for FLAssess classplot,FLAssess-methods
Separable Virtual Population Analysis in FLRassess,FLSepVPA.control-method SepVPA SepVPA,FLStock-method SepVPA-methods
Virtual Population Analysis in FLRFLVPA-class VPA VPA,FLStock-method VPA-methods
Calculates total mortalityZ Z,FLStock-method Z-methods