Package: FLAssess 2.6.3

Iago Mosqueira

FLAssess: Generic Classes and Methods for Stock Assessment Models

A generic set of classes for stock assessment models are provided here. Individual assessment packages should extend the basic classes.

Authors:Iago Mosqueira [cre], Laurence T. Kell [aut]

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FLAssess.pdf |FLAssess.html✨
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NEWS

# Install 'FLAssess' in R:
install.packages('FLAssess', repos = c('https://flr.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/flr/flassess/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

    On CRAN:

    20 exports 1.31 score 30 dependencies 3 dependents 324 scripts

    Last updated 2 years agofrom:03d018dbad. Checks:OK: 1 WARNING: 8. Indexed: yes.

    TargetResultDate
    Doc / VignettesOKAug 16 2024
    R-4.5-win-x86_64WARNINGAug 16 2024
    R-4.5-linux-x86_64WARNINGAug 16 2024
    R-4.4-win-x86_64WARNINGAug 16 2024
    R-4.4-mac-x86_64WARNINGAug 16 2024
    R-4.4-mac-aarch64WARNINGAug 16 2024
    R-4.3-win-x86_64WARNINGAug 16 2024
    R-4.3-mac-x86_64WARNINGAug 16 2024
    R-4.3-mac-aarch64WARNINGAug 16 2024

    Exports:assessfittedFLAssessFLSepVPA.controlfmleharvestindex.hatindex.hat<-index.nameindex.name<-index.rangeindex.range<-index.resindex.res<-mergeplotSepVPAsummaryVPAZ

    Dependencies:clicolorspacefansifarverFLCoreggplot2gluegtableisobanditeratorslabelinglatticelifecyclemagrittrMASSMatrixmgcvmunsellnlmepillarpkgconfigR6RColorBrewerrlangscalestibbleutf8vctrsviridisLitewithr

    Readme and manuals

    Help Manual

    Help pageTopics
    Call an stock assessment modelassess assess,FLAssess-method assess-methods
    FLAssess datasetass
    FLAssess class and methods+,FLAssess,FLStock-method +,FLStock,FLAssess-method FLAssess FLAssess,FLQuant-method FLAssess,missing-method FLAssess-class FLAssess-methods harvest,FLAssess,missing-method index.hat index.hat,FLAssess-method index.hat<- index.hat<-,FLAssess,FLQuants-method index.name index.name,FLAssess-method index.name<- index.name<-,FLAssess,character-method index.range index.range,FLAssess-method index.range<- index.range<-,FLAssess,list-method index.res index.res,FLAssess-method index.res<- index.res<-,FLAssess,FLQuants-method merge,FLStock,FLAssess-method plot,FLAssess,missing-method show,FLAssess-method summary,FLAssess-method units,FLAssess-method units<-,FLAssess,list-method update,FLAssess-method window,FLAssess-method
    Control class for FLSepVPAFLSepVPA.control FLSepVPA.control-class
    Sets catch data if no discardsno.discards no.discards,FLStock-method no.discards-methods
    Plot method for FLAssess classplot,FLAssess-methods
    Separable Virtual Population Analysis in FLRassess,FLSepVPA.control-method SepVPA SepVPA,FLStock-method SepVPA-methods
    Virtual Population Analysis in FLRFLVPA-class VPA VPA,FLStock-method VPA-methods
    Calculates total mortalityZ Z,FLStock-method Z-methods