Package: FLife 3.4.0

Laurence Kell

FLife: Methods for Modelling Life History Traits

Many studies have shown the relationships between life history traits for processes such as growth, maturity and natural mortality. Life history has been used to develop priors in stock assesments and to parameterise ecological models. Package has a variety of methods for modelling life history traits and processes.

Authors:Laurence Kell <[email protected]>

FLife_3.4.0.tar.gz
FLife_3.4.0.zip(r-4.7)FLife_3.4.0.zip(r-4.6)FLife_3.4.0.zip(r-4.5)
FLife_3.4.0.tgz(r-4.6-any)FLife_3.4.0.tgz(r-4.5-any)
FLife_3.4.0.tar.gz(r-4.7-any)FLife_3.4.0.tar.gz(r-4.6-any)
FLife_3.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
FLife/json (API)

# Install 'FLife' in R:
install.packages('FLife', repos = c('https://flr.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/flr/flife/issues

Datasets:

On CRAN:

Conda:

5.39 score 2 stars 274 scripts 42 exports 31 dependencies

Last updated from:16b34762fe. Checks:7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING215
source / vignettesOK273
linux-release-x86_64WARNING198
macos-release-arm64WARNING144
macos-oldrel-arm64WARNING136
windows-develWARNING170
windows-releaseWARNING142
windows-oldrelWARNING183
wasm-releaseOK149

Exports:addRefsagescharnovdjabablidnormalFLStockgascuelgislasongompertzgriffithsgrwddicesRefptsjensenjensen2knifelen2wtleslielhEqllhParlhReflhStklogisticloptloptAgelorenzenmatddmddnonStnpetersenrrichardsrikhterrikhter2rlnoisernoiserodroffsigmoidsurplusPrdsvvonBwt2len

Dependencies:clicowplotcpp11data.tablefarverFLBRPFLCoreggplot2ggplotFLggrepelgluegridExtragtableisobanditeratorslabelinglatticelifecycleMASSMatrixpatchworkplyrR6RColorBrewerRcpprlangS7scalesvctrsviridisLitewithr

FLife
Introduction | Quick Start | Life History Relationships | Data | lhPar method | Growth | Maturity | Natural Mortality | Stock recruitment relationship | Dynamics | Expected dynamics | lhEql | Functional Forms | Ogives | Growth curves | Conversions | Population growth rate | Time series dynamics | lhStock | Density Dependence | Indicators | Simulation | Projections | Stochasticity | Management Strategy Evaluation | More Information | Software Versions | Author information | Acknowledgements | References
Rendered fromFLife-full.Rmdusingknitr::rmarkdown

Last update: 2022-08-30
Started: 2019-09-13

FLife
FLife package | Life history parameters | Equilibrium Dynamics | Simulation | Software Versions | Author information | Acknowledgements | References
Rendered fromFLife-wklife.Rmdusingknitr::rmarkdown

Last update: 2022-08-30
Started: 2017-09-13

FLife
Download
Rendered fromFLife.Rmdusingknitr::rmarkdown

Last update: 2021-11-18
Started: 2015-11-02

Readme and manuals

Help Manual

Help pageTopics
Fills an 'FLQuant' with agesages ages,FLCohort-method ages,FLQuant-method ages-method
cascas
Double normal ogivednormal dnormal,FLPar,FLPar-method dnormal,FLQuant,FLPar-method dnormal,FLQuant,numeric-method dnormal,numeric,numeric-method dnormal-method
Gascuel growth curvegascuel gascuel,FLPar,FLPar-method gascuel,FLPar,FLQuant-method gascuel,FLPar,missing-method gascuel,FLQuant,FLPar-method gascuel,FLQuant,missing-method gascuel,missing,FLPar-method gascuel,missing,missing-method gascuel,numeric,FLPar-method gascuel,numeric,FLQuant-method gascuel,numeric,missing-method gascuel,numeric,numeric-method gascuel-method
gislasongislason gislason,FLQuant,FLPar-method gislason,FLQuant,missing-method gislason,FLQuant,numeric-method gislason-method
Gompertz growth equationg gompertz gompertz,FLPar,FLPar-method gompertz,FLQuant,FLPar-method gompertz,FLQuant,numeric-method gompertz,missing,FLPar-method gompertz,numeric,numeric-method gompertz-method
grwddgrwdd grwdd,FLQuant,FLPar-method grwdd-method
knife edge ogiveknife knife,FLPar,FLPar-method knife,FLQuant,FLPar-method knife,FLQuant,numeric-method knife,numeric,numeric-method knife-method
Length to weight conversionlen2wt len2wt,FLCohort,FLPar-method len2wt,FLQuant,FLPar-method len2wt,numeric,FLPar-method len2wt-method
Leslie matrixleslie leslie,FLBRP-method leslie-method
Derives an 'FLBRP' from life history parameterslhEql lhEql,FLPar-method lhEql-method
Generates life history parameterslhPar lhStk
Reference points based on life historieslhRef
logisticlogistic logistic,FLQuant,FLPar-method logistic-method
Loptlopt lopt,FLPar-method lopt-method
Age at maximum biomassloptAge loptAge,FLPar-method loptAge-method
lorenzenlorenzen lorenzen,FLQuant,FLPar-method lorenzen,FLQuant,missing-method lorenzen,FLQuant,numeric-method lorenzen,numeric,missing-method lorenzen-method
matddmatdd matdd,FLQuant,FLPar-method matdd-method
mddmdd mdd,FLQuant,FLPar-method mdd-method
Population growth rater,FLPar,missing-method r,FLPar-method r-method
Richards growth curverichards richards,FLPar,FLPar-method richards,FLQuant,FLPar-method richards,FLQuant,numeric-method richards,missing,FLPar-method richards,numeric,FLPar-method richards,numeric,numeric-method richards-method
Random noise with different frequenciesrlnoise rlnoise,numeric,FLQuant-method rlnoise,numeric,missing-method rlnoise-method
Random noise with different frequenciesrnoise,numeric,FLQuant-method rnoise,numeric,missing-method rnoisernoise-method
rodrod rod,FLQuant-method rod-method
Natural mortalitycharnov charnov,FLQuant,FLPar-method charnov-method djababli djababli,FLPar-method djababli-method gislasen gislasen,FLQuant,FLPar-method gislasen-method griffiths griffiths,FLPar-method griffiths-method jensen jensen,FLPar-method jensen-method jensen2 jensen2,FLPar-method jensen2-method lorenzen lorenzen,FLQuant,FLPar-method lorenzen-method petersen petersen,FLPar-method petersen,FLQuant,FLPar-method petersen-method rikhter rikhter,FLPar-method rikhter-method rikhter2 rikhter2,FLPar-method rikhter2-method roff roff,FLPar-method roff-method
Sigmoid ogivesigmoid sigmoid,FLPar,FLPar-method sigmoid,FLQuant,FLPar-method sigmoid,FLQuant,numeric-method sigmoid,numeric,numeric-method sigmoid-method
Calculates steepness and virgin biomasssv,FLPar,character-method
teleostteleost
von Bertalanffy growth curvevonB vonB,FLPar,FLPar-method vonB,FLQuant,FLPar-method vonB,FLQuant,numeric-method vonB,missing,FLPar-method vonB,numeric,FLPar-method vonB,numeric,numeric-method vonB-method
wklifewklife
Mass to length conversionwt2len wt2len,FLCohort,FLPar-method wt2len,FLQuant,FLPar-method wt2len,numeric,FLPar-method wt2len-method