Package: bbm 0.0.3

Leire Ibaibarriaga

bbm: FLR Implementation of a Two-Stage Stock Assessment Model

The two-stage biomass-based model for the Bay of Biscay anchovy (Ibaibarriaga et al., 2008).

Authors:Leire Ibaibarriaga [cre, aut], Sonia Sanchez [aut]

bbm_0.0.3.tar.gz
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bbm_0.0.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
bbm/json (API)

# Install 'bbm' in R:

install.packages('bbm', repos = c('https://flr.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/flr/bbm/issues

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

cpp

1.70 score 5 scripts 30 exports 31 dependencies

Last updated from:c449fad0f3. Checks:12 ERROR, 1 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	ERROR	201
linux-devel-x86_64	ERROR	218
source / vignettes	ERROR	274
linux-release-arm64	ERROR	228
linux-release-x86_64	ERROR	198
macos-release-arm64	ERROR	174
macos-release-x86_64	ERROR	240
macos-oldrel-arm64	ERROR	162
macos-oldrel-x86_64	ERROR	268
windows-devel	ERROR	187
windows-release	ERROR	199
windows-oldrel	ERROR	196
wasm-release	OK	162

Exports:AIC bbm bbmControl bbmFit bbmFitresiduals bbmFLPar BIC calcIndices calcPop convergence createInits fitSumm g indicesB indicesP inputs iter logLik message param.fix params.se periods plot qqmath residuals residuals.B residuals.P simIndices stock.bio vcov

Dependencies:cli cowplot cpp11 data.table farver FLCore ggplot2 ggplotFL ggrepel glue gridExtra gtable isoband iterators labeling lattice lifecycle MASS Matrix patchwork R6 RColorBrewer Rcpp RcppEigen rlang S7 scales TMB vctrs viridisLite withr

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Method bbm	bbm bbm,FLQuant,FLIndices,FLIndices-method bbm,FLQuant,FLQuant,FLQuant-method bbm,FLStock,ANY,ANY-method bbm-method bbm-methods
bbmControl class	bbmControl bbmControl,missing-method bbmControl-class bbmControl-methods g,bbmControl-method param.fix,bbmControl-method
bbmFit class	+,FLStock,bbmFit-method AIC,bbmFit,ANY-method AIC,bbmFit-method bbmFit bbmFit,missing-method bbmFit-class bbmFit-methods BIC,bbmFit-method convergence,bbmFit-method fitSumm,bbmFit-method indicesB,bbmFit-method indicesP,bbmFit-method input,bbmFit-method iter,bbmFit-method logLik,bbmFit-method message,bbmFit-method params,bbmFit-method params.se,bbmFit-method plot,bbmFit-method residuals,bbmFit-method stock.bio,bbmFit-method vcov,bbmFit-method
bbmFitresiduals class	bbmFitresiduals bbmFitresiduals-class bbmFitresiduals-methods plot,bbmFitresiduals-method qqmath,bbmFitresiduals-method residualsB,bbmFitresiduals-method residualsP,bbmFitresiduals-method
Function to generate an FLPar for bbm function	bbmFLPar
Function to estimate fitted indices	calcIndices
Function to estimate abundances	calcPop
Method createInits	createInits createInits,FLQuant,FLIndices,FLIndices-method createInits,FLQuant,FLQuant,FLQuant-method createInits,FLQuant,FLQuants,FLQuants-method createInits,FLStock,ANY,ANY-method createInits,FLStock,FLQuant,FLQuant-method createInits-methods
bbm package datasets	ane datasets
Function to estimate the seasons	periods
Plot of Pearson residuals of survey indices	plot plot,bbmFit,missing-method plot,bbmFitresiduals,missing-method
Normal Q-Q Plot of surveys' indices	qqmath qqmath,bbmFitresiduals,missing-method qqplot
Method simIndices	simIndices simIndices,FLQuant-method simIndices,FLStock-method simIndices-methods