Package: ss3om 0.5.2.9016
![](https://github.com/flr/ss3om/raw/HEAD/man/figures/logo.png)
ss3om: Tools for Conditioning Fisheries Operating Models Using Stock Synthesis 3
Tools for loading Stock Synthesis (SS3) models into FLR. Used in conditioning of Operating Models based on SS3 by considering structural uncertainty in input parameters and assumptions. A grid of SS3 runs can be created and results loaded on objects of various FLR classes.
Authors:
ss3om_0.5.2.9016.tar.gz
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ss3om_0.5.2.9016.tgz(r-4.4-any)ss3om_0.5.2.9016.tgz(r-4.3-any)
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ss3om.pdf |ss3om.html✨
ss3om/json (API)
NEWS
# Install 'ss3om' in R: |
install.packages('ss3om', repos = c('https://flr.r-universe.dev', 'https://cloud.r-project.org')) |
The latest version of this package failed to build. Look at thebuild logs for more information.
Bug tracker:https://github.com/flr/ss3om/issues
Last updated 4 months agofrom:2b2b421ab3. Checks:OK: 1 WARNING: 6. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Aug 13 2024 |
R-4.5-win | WARNING | Aug 13 2024 |
R-4.5-linux | WARNING | Aug 13 2024 |
R-4.4-win | WARNING | Aug 13 2024 |
R-4.4-mac | WARNING | Aug 13 2024 |
R-4.3-win | WARNING | Aug 13 2024 |
R-4.3-mac | WARNING | Aug 13 2024 |
Exports:buildFLBFss3buildFLBFss330buildFLIBss3buildFLIBss330buildFLRPss3buildFLRPss330buildFLSRss3buildFLSss3buildFLSss330buildKobess3buildKobess330buildLCss330buildRESss3buildRESss330convergencelevelextractDevsextractFbarextractRecextractSSBextractZatageloadFLQsloadFLSloadOMloadOMSloadOUTloadRESloadRESIDsloadRPsnameGridpackss3runprepareRetroreadCDss3readFLIBss3readFLoemss3readFLomss3readFLRPss3readFLSRss3readFLSss3readKobess3readOMSss3readOutputss3readRESIDss3readRESss3readSRIss3resultsresults<-runss3gridruntimessmvln
Dependencies:base64encbslibcachemclicodacodetoolscolorspacecorpcorcowplotcpp11data.tabledigestdoFuturedplyrevaluatefansifarverfastmapFLasherFLBRPFLCoreFLFisheryfontawesomeforcatsforeachfsfuturefuture.applygenericsggplot2ggplotFLggrepelglobalsgluegridExtragtablehighrhtmltoolsisobanditeratorsjquerylibjsonlitekableExtraknitrlabelinglatticelifecyclelistenvmagrittrMASSMatrixmemoisemgcvmimemsemunsellmvtnormnlmeparallellypatchworkpillarpkgconfigprogressrr4ssR6rappdirsRColorBrewerRcpprlangrmarkdownrstudioapisassscalesstringistringrsvglitesystemfontstibbletidyselecttinytexutf8vctrsviridisLitewithrxfunxml2yaml
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Extracts derived quantities from SS output | extractDevs extractFbar extractRec extractSSB extractZatage |
nameGrid | nameGrid |
A function to read the CPUE series from an SS3 run into an 'FLIndex' object | readFLIBss3 |
A function to read the stock-recruit relationships from an SS3 run into an 'FLSR' object | readFLSRss3 |
A function to read SS3 results as an FLStock object | readFLSss3 |
Functions to convert SS3 output into FLQuant(s) | ss3catch ss3catch30 ss3index ss3index.q ss3index.res ss3index.var ss3m ss3m30 ss3mat ss3mat30 ss3n ss3n30 ss3sel.pattern ss3slot ss3wt |