Package: FLSRTMB 1.1.4.9018

Henning Winker

FLSRTMB: FLSR in TMB

Estimates FLR spawner recruitment relationships in TMB

Authors:Henning Winker [aut, cre], European Union [fnd, cph], Iago Mosqueira [aut], Christoffer Moesgaard Albertsen [ctb]

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FLSRTMB.pdf |FLSRTMB.html✨
FLSRTMB/json (API)
NEWS

# Install 'FLSRTMB' in R:

install.packages('FLSRTMB', repos = c('https://flr.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/flr/flsrtmb/issues

Uses libs:

c++– GNU Standard C++ Library v3

On CRAN:

stock-recruit fisheries flr tmb ad cpp

3.67 score 1 packages 26 scripts 19 exports 48 dependencies

Last updated 7 days agofrom:512ba5c06f. Checks:1 OK, 10 WARNING. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Mar 02 2025
R-4.5-win-x86_64	WARNING	Mar 02 2025
R-4.5-mac-x86_64	WARNING	Mar 02 2025
R-4.5-mac-aarch64	WARNING	Mar 02 2025
R-4.5-linux-x86_64	WARNING	Mar 02 2025
R-4.4-win-x86_64	WARNING	Mar 02 2025
R-4.4-mac-x86_64	WARNING	Mar 02 2025
R-4.4-mac-aarch64	WARNING	Mar 02 2025
R-4.3-win-x86_64	WARNING	Mar 02 2025
R-4.3-mac-x86_64	WARNING	Mar 02 2025
R-4.3-mac-aarch64	WARNING	Mar 02 2025

Exports:blimprior bootstrapSR dprior from_logitd from_logits gm hsblim plot_bootstrapSR plotjitter plotsrs plotsrts productivity spr0y sprFy sprior srrjitter srrTMB to_logitd to_logits

Dependencies:cli codetools colorspace cowplot data.table digest doFuture fansi farver FLCore foreach future future.apply ggplot2 ggplotFL ggrepel globals glue gridExtra gtable isoband iterators labeling lattice lifecycle listenv magrittr MASS Matrix mgcv munsell nlme parallelly pillar pkgconfig progressr R6 RColorBrewer Rcpp RcppEigen rlang scales tibble TMB utf8 vctrs viridisLite withr

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
blimprior plot Plots the bounds of the hockey-stick break-point	blimprior
Bootstrap fits of mutliple stock-recruits relationships	bootstrapSR
dprior plot Plots the logit prior distribution for depensation	dprior
from_logitd()	from_logitd
from_logits()	from_logits
gm()	gm
hsblim()	hsblim
plots Jitter results	plotjitter
plotsrs based on plot(FLSRs) Plots FLSRs, i.e. multiple S-R relationships	plotsrs
Plots time series of observed and predicted recruitment	plotsrts
productivity()	productivity
spr0y()	spr0y
sprFy()	sprFy
sprior plot Plots the logit prior distribution for steepness	sprior
Jitter of S-R fits	srrjitter
Fits Stock Recruitment Relationships (SRR) in TMB	srrTMB srrTMB,FLSR-method srrTMB,FLSRs-method
to_logitd()	to_logitd
to_logits()	to_logits

Usage by other packages (reverse dependencies)